MicrobiomeDB 10 Released (15 December 2018)

We are pleased to announce the release of MicrobiomeDB 10

New data in this release

  • The GEMS1 case control dataset contains microbiome data from over 1000 children from The Gambia, Bangladesh, Kenya and Mali.

New features in this release

  • The entire site has been redesigned to showcase datasets, example queries and data visualization apps.
  • In previous releases, all data was loaded from .biom files. Advances in our data loading workflow allowed us to load raw fastq sequence files for all studies.

MicrobiomeDB 3 Released (7 September 2017)

We are pleased to announce the release of MicrobiomeDB 3

No New data in this release

New features in this release

  • The alpha diversity app has been updated to better handle longitudinal data. A linear model fit is applied to the data, allowing users to compare alpha divesity trends over time between two covariates.
  • The beta diversity app has been modified to improve the calculation and display of large numbers of samples. In addition, users can now map both point color and shape to sample details.
  • A new correlation app has been added, bringing the total number of apps in the analysis tools section to five. This 'Corr' app allows users to visualize Spearman's correlation and statistics between taxa and categorical variables, or between the categorical variables themselves.

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